http://purl.obolibrary.org/obo/OBI_0000304 |
|
http://www.w3.org/2000/01/rdf-schema#range
|
http://xmlns.com/foaf/0.1/Organization
|
|
http://purl.obolibrary.org/obo/IAO_0000117
|
Alan Ruttenberg |
| Liju Fan
|
|
http://purl.obolibrary.org/obo/IAO_0000118
|
has_manufacturer |
| has_make
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
manufactured by
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
c is_manufactured_by o means that there was a process p in which c was built in which a person, or set of people or machines did the work(bore the "Manufacturer Role", and those people/and or machines were members or of directed by the organization to do this.
|
|
http://www.w3.org/2000/01/rdf-schema#domain
|
http://purl.obolibrary.org/obo/BFO_0000040
|
|
http://purl.obolibrary.org/obo/IAO_0000111
|
is_manufactured_by
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
http://www.affymetrix.com/products/arrays/specific/hgu133.affx is_manufactered_by http://www.affymetrix.com/ (if we decide to use these URIs for the actual entities)
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#ObjectProperty
|
http://purl.obolibrary.org/obo/IAO_0000300 |
|
http://purl.obolibrary.org/obo/IAO_0000117
|
PERSON: Lawrence Hunter
|
|
http://purl.obolibrary.org/obo/IAO_0000118
|
text
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
Textual Entity
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
A textual entity is a part of a manifestation (FRBR sense), a generically dependent continuant whose concretizations are patterns of glyphs intended to be interpreted as words, formulas, etc.
|
|
http://purl.obolibrary.org/obo/IAO_0000116
|
MC, 2009-09-14 (following IAO call 2009-09-01): textual entities live at the FRBR (http://en.wikipedia.org/wiki/Functional_Requirements_for_Bibliographic_Records) manifestation level. Everything is significant: line break, pdf and html versions of same document are different textual entities. |
| AR, (IAO call 2009-09-01): a document as a whole is not typically a textual entity, because it has pictures in it - rather there are parts of it that are textual entities. Examples: The title, paragraph 2 sentence 7, etc.
|
|
http://purl.obolibrary.org/obo/IAO_0000111
|
textual entity
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
Words, sentences, paragraphs, and the written (non-figure) parts of publications are all textual entities
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
http://purl.obolibrary.org/obo/IAO_0000030
|
http://purl.org/ontology/bibo/Webpage |
|
http://www.w3.org/2003/06/sw-vocab-status/ns#term_status
|
unstable
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
One section of a website that appears at a unique address within the parent site's address or URL on the World Wide Web
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
Webpage
|
|
http://www.w3.org/2000/01/rdf-schema#isDefinedBy
|
http://purl.org/ontology/bibo/
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#comment
|
A web page is an online document available (at least initially) on the world wide web. A web page is written first and foremost to appear on the web, as distinct from other online resources such as books, manuscripts or audio documents which use the web primarily as a distribution mechanism alongside other more traditional methods such as print.
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
http://purl.org/ontology/bibo/Document
|
http://vivoweb.org/ontology/core#PrivateCompany |
|
http://www.w3.org/2000/01/rdf-schema#label
|
Private Company
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
A private company is one that is privately-owned, and thus, is not publicly-traded in the stock market. Members of the general public cannot purchase stock in a private company unless that company chooses to go public and become a public company.
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
Definition obtained here: http://answers.ask.com/Business/Finance/what_is_a_private_company. Examples of private companies found here: http://www.forbes.com/2008/11/03/largest-private-companies-biz-privates08-cx_sr_1103private_land.html |
| Publix Super Markets; Ernst & Young; PricewaterhouseCoopers
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
http://vivoweb.org/ontology/core#Company
|
http://vivoweb.org/ontology/core#ClinicalOrganization |
|
http://www.w3.org/2000/01/rdf-schema#label
|
Clinical Organization
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
Any organization with a significant clinical function as a matter of course and not just through occasional clinical roles |
| Any organization that offers significant health services or routinely provides medical care to patients.
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
In the future we may be able to make this a defined class that would not need to be directly asserted, but the consensus seems to be that some organizations "are" clinical and some "are" research organizations and that the distinction is important enough to warrant the additional class and class assertions
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
http://xmlns.com/foaf/0.1/Organization
|
http://purl.org/ontology/bibo/Hearing |
|
http://www.w3.org/2003/06/sw-vocab-status/ns#term_status
|
stable
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
An instance or a session in which testimony and arguments are presented, esp. before an official, as a judge in a lawsuit.
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
Hearing
|
|
http://www.w3.org/2000/01/rdf-schema#isDefinedBy
|
http://purl.org/ontology/bibo/
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
Definiton from Bibo here: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#comment
|
An instance or a session in which testimony and arguments are presented, esp. before an official, as a judge in a lawsuit.
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
http://purl.org/NET/c4dm/event.owl#Event
|
http://vivoweb.org/ontology/core#Committee |
|
http://purl.obolibrary.org/obo/IAO_0000115
|
A group of people organized for a specific purpose, whose members are often selected from a larger group to serve for designated periods of time. |
| A group of people organized for a specific purpose (e.g., a reporting or advisory role), often with a charge and for a specific duration
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
Committee
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
Curriculum Steering Committee; PhD Advisory Committee |
| There could be many subclasses such as thesis committee or tenure committee, but these may typically be differentiated via the moniker unless distinct properties become important.
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
http://xmlns.com/foaf/0.1/Group
|
http://purl.obolibrary.org/obo/OBI_0000417 |
|
http://www.w3.org/2000/01/rdf-schema#range
|
http://purl.obolibrary.org/obo/IAO_0000005
|
|
http://purl.obolibrary.org/obo/IAO_0000119
|
PPPB branch derived
|
|
http://purl.obolibrary.org/obo/IAO_0000117
|
BP, AR, PPPB branch
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
achieves planned objective
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
This relation obtains between a planned process and a objective specification when the criteria specified in the objective specification are met at the end of the planned process.
|
|
http://www.w3.org/2000/01/rdf-schema#domain
|
http://purl.obolibrary.org/obo/OBI_0000011
|
|
http://www.w3.org/2002/07/owl#inverseOf
|
http://purl.obolibrary.org/obo/OBI_0000833
|
|
http://purl.obolibrary.org/obo/IAO_0000232
|
modified according to email thread from 1/23/09 in accordince with DT and PPPB branch
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
A cell sorting process achieves the objective specification 'material separation objective'
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#ObjectProperty
|
http://purl.obolibrary.org/obo/OBI_0000017 |
|
http://purl.obolibrary.org/obo/IAO_0000119
|
OBI, CDISC
|
|
http://purl.obolibrary.org/obo/IAO_0000117
|
GROUP: Role branch
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
a role which inheres in material entities and is realized in the processes of making, enforcing or being defined by legislation or orders issued by a governmental body.
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
Regulatory Role
|
|
http://purl.obolibrary.org/obo/IAO_0000412
|
http://purl.obolibrary.org/obo/obi.owl
|
|
http://purl.obolibrary.org/obo/IAO_0000114
|
http://purl.obolibrary.org/obo/IAO_0000120
|
|
http://purl.obolibrary.org/obo/IAO_0000111
|
regulatory role
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
Regulatory agency, Ethics committee, Approval letter; example: Browse these EPA Regulatory Role subtopics http://www.epa.gov/ebtpages/enviregulatoryrole.html Feb 29, 2008
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
http://purl.obolibrary.org/obo/BFO_0000023
|
http://purl.org/ontology/bibo/Workshop |
|
http://www.w3.org/2003/06/sw-vocab-status/ns#term_status
|
stable
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
Workshop
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
Bibo Definition: A seminar, discussion group, or the like, that emphasizes exchange of ideas and the demonstration and application of techniques, skills, etc.
|
|
http://www.w3.org/2000/01/rdf-schema#isDefinedBy
|
http://purl.org/ontology/bibo/
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#comment
|
A seminar, discussion group, or the like, that emphasizes zxchange of ideas and the demonstration and application of techniques, skills, etc.
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
http://purl.org/NET/c4dm/event.owl#Event
|
http://purl.obolibrary.org/obo/IAO_0000013 |
|
http://purl.obolibrary.org/obo/IAO_0000119
|
group:OBI |
| OBI_0000159
|
|
http://purl.obolibrary.org/obo/IAO_0000117
|
person:Chris Stoeckert |
| person:Alan Ruttenberg
|
|
http://purl.obolibrary.org/obo/IAO_0000412
|
http://purl.obolibrary.org/obo/iao.owl
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
Journal Article
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
a report that is published in a journal
|
|
http://purl.obolibrary.org/obo/IAO_0000114
|
http://purl.obolibrary.org/obo/IAO_0000120
|
|
http://purl.obolibrary.org/obo/IAO_0000111
|
journal article
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
Examples are articles published in the journals, Nature and Science. The content can often be cited by reference to a paper based encoding, e.g. Authors, Title of article, Journal name, date or year of publication, volume and page number.
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
http://purl.org/ontology/bibo/AcademicArticle
|
http://vivoweb.org/ontology/scientific-research#nctId |
|
http://vitro.mannlib.cornell.edu/ns/vitro/0.7#exampleAnnot
|
NCT00000419
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
National Clinical Trials (NCT) number
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
ClinicalTrials.gov is an ICMJE-acceptable public registry, offering up-to-date information for locating clinical trials for a wide range of diseases and conditions. The U.S. National Institutes of Health (NIH), through its National Library of Medicine (NLM), developed this site in collaboration with the Food and Drug Administration (FDA), as a result of the FDA Modernization Act, which was passed into law in November 1997. This property should be publically visible since it is one of the principal identifiers in a national registry of clinical trials
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#DatatypeProperty
|
http://aims.fao.org/aos/geopolitical.owl#countryArea |
|
http://purl.org/dc/terms/description
|
Country area, area of the country including area under inland water bodies, but excluding offshore territorial waters. Possible variations in the data may be due to updating and revisions of the country data and not necessarily to any change of area. Data are expressed in 1000 hectares. http://faostat.fao.org/site/375/default.aspx
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
countryArea
|
|
http://aims.fao.org/aos/geopolitical.owl#sourceModified
|
2011-07-21
|
|
http://purl.org/dc/terms/source
|
FAOSTAT http://faostat.fao.org/DesktopDefault.aspx?PageID=377&lang=en#ancor
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#DatatypeProperty
|
|
http://aims.fao.org/aos/geopolitical.owl#sourceIdentifier
|
http://faostat.fao.org/DesktopDefault.aspx?PageID=377&lang=en#ancor |
| http://faostat.fao.org/DesktopDefault.aspx?PageID=377&lang=es#ancor |
| http://faostat.fao.org/DesktopDefault.aspx?PageID=377&lang=en#ancor |
| http://faostat.fao.org/DesktopDefault.aspx?PageID=377&lang=fr#ancor
|
|
http://aims.fao.org/aos/geopolitical.owl#sourceCreator
|
FAOSTAT
|
http://purl.org/ontology/bibo/Magazine |
|
http://www.w3.org/2003/06/sw-vocab-status/ns#term_status
|
stable
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
Magazine
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
Contains articles of current events or general interest, geared to the reading public as being informative or recreational
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
Abstracts and bibliographies are usually not included in magazines. |
| New Yorker
|
|
http://www.w3.org/2000/01/rdf-schema#isDefinedBy
|
http://purl.org/ontology/bibo/
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#comment
|
A periodical of magazine Articles. A magazine is a publication that is issued periodically, usually bound in a paper cover, and typically contains essays, stories, poems, etc., by many writers, and often photographs and drawings, frequently specializing in a particular subject or area, as hobbies, news, or sports.
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
http://purl.org/ontology/bibo/Periodical
|
http://aims.fao.org/aos/geopolitical.owl#agriculturalArea |
|
http://purl.org/dc/terms/description
|
Agricultural area, this category is the sum of areas under a) arable land - land under temporary agricultural crops (multiple-cropped areas are counted only once), temporary meadows for mowing or pasture, land under market and kitchen gardens and land temporarily fallow (less than five years). The abandoned land resulting from shifting cultivation is not included in this category. Data for “Arable land” are not meant to indicate the amount of land that is potentially cultivable; (b) permanent crops - land cultivated with long-term crops which do not have to be replanted for several years (such as cocoa and coffee); land under trees and shrubs producing flowers, such as roses and jasmine; and nurseries (except those for forest trees, which should be classified under "forest"); and (c) permanent meadows and pastures - land used permanently (five years or more) to grow herbaceous forage crops, either cultivated or growing wild (wild prairie or grazing land). Data are expressed in 1000 hectares. http://faostat.fao.org/site/375/default.aspx
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
agricultural area
|
|
http://aims.fao.org/aos/geopolitical.owl#sourceModified
|
2010-07-21
|
|
http://purl.org/dc/terms/source
|
FAOSTAT http://faostat.fao.org/DesktopDefault.aspx?PageID=377&lang=en#ancor
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#DatatypeProperty
|
|
http://aims.fao.org/aos/geopolitical.owl#sourceIdentifier
|
http://faostat.fao.org/DesktopDefault.aspx?PageID=377&lang=en#ancor |
| http://faostat.fao.org/DesktopDefault.aspx?PageID=377&lang=es#ancor |
| http://faostat.fao.org/DesktopDefault.aspx?PageID=377&lang=en#ancor |
| http://faostat.fao.org/DesktopDefault.aspx?PageID=377&lang=fr#ancor
|
|
http://aims.fao.org/aos/geopolitical.owl#sourceCreator
|
FAOSTAT
|
http://aims.fao.org/aos/geopolitical.owl#population |
|
http://purl.org/dc/terms/description
|
The total population usually refers to the present-in-area (de facto) population which includes all persons physically present within the present geographical boundaries of countries at the mid-point of the reference period. http://faostat.fao.org/site/375/default.aspx
|
|
http://aims.fao.org/aos/geopolitical.owl#sourceModified
|
2009-09-21
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
population
|
|
http://purl.org/dc/terms/source
|
FAOSTAT http://faostat.fao.org/site/550/default.aspx
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#DatatypeProperty
|
|
http://aims.fao.org/aos/geopolitical.owl#sourceIdentifier
|
http://faostat.fao.org/DesktopDefault.aspx?PageID=550&lang=en#ancor |
| http://faostat.fao.org/DesktopDefault.aspx?PageID=550&lang=es#ancor |
| http://faostat.fao.org/DesktopDefault.aspx?PageID=550&lang=en#ancor |
| http://faostat.fao.org/DesktopDefault.aspx?PageID=550&lang=fr#ancor
|
|
http://aims.fao.org/aos/geopolitical.owl#sourceCreator
|
FAOSTAT
|
http://purl.obolibrary.org/obo/ERO_0000012 |
|
http://purl.obolibrary.org/obo/IAO_0000119
|
PERSON: Nicole Vasilevsky
|
|
http://purl.obolibrary.org/obo/IAO_0000117
|
PERSON: Nicole Vasilevsky
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
A role inhering in a person or organization that is realized when the bearer participates in providing a service to meet the need of another person or thing. |
| An role of an individual within his or her profession or institution; use outreach provider role for community service or other activities outside the profession.
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
Service Provider Role
|
|
http://purl.obolibrary.org/obo/IAO_0000114
|
http://purl.obolibrary.org/obo/IAO_0000120
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
Member of the International Conference on Complex Systems Organizing Committee |
| A technician in a core laboratory.
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
http://purl.obolibrary.org/obo/BFO_0000023
|
http://purl.org/ontology/bibo/degree |
|
http://www.w3.org/2000/01/rdf-schema#range
|
http://purl.org/ontology/bibo/ThesisDegree
|
|
http://www.w3.org/2003/06/sw-vocab-status/ns#term_status
|
unstable
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
related degree
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
The source of the public description and this info is found here: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html. Bibo considers this term "unstable". The bibo editorial note is: "We are not defining, using an enumeration, the range of the bibo:degree to the defined list of bibo:ThesisDegree. We won't do it because we want people to be able to define new degress if needed by some special usecases. Creating such an enumeration would restrict this to happen."
|
|
http://www.w3.org/2000/01/rdf-schema#isDefinedBy
|
http://purl.org/ontology/bibo/
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#ObjectProperty
|
|
http://www.w3.org/2000/01/rdf-schema#comment
|
The thesis degree.
|
|
http://www.w3.org/2008/05/skos#editorialNote
|
We are not defining, using an enumeration, the range of the bibo:degree to the defined list of bibo:ThesisDegree. We won't do it because we want people to be able to define new degress if needed by some special usecases. Creating such an enumeration would restrict this to happen.
|
http://aims.fao.org/aos/geopolitical.owl#HDI |
|
http://purl.org/dc/terms/description
|
composite index measuring average achievement in three basic dimensions of human development-a long and healthy life, knowledge and a decent standard of living. Source: Calculated based on data from UNDESA (2009d), Barro and Lee (2010), UNESCO Institute for Statistics (2010b), World Bank (2010b) and IMF(2010a) . http://hdrstats.undp.org/en/indicators/49806.html |
| composite index measuring average achievement in three basic dimensions of human development—a long and healthy life, knowledge and a decent standard of living. Source: Calculated based on data from UNDESA (2009d), Barro and Lee (2010), UNESCO Institute for Statistics (2010b), World Bank (2010b) and IMF(2010a) . http://hdrstats.undp.org/en/indicators/49806.html
|
|
http://aims.fao.org/aos/geopolitical.owl#sourceModified
|
2010-11-04
|
|
http://purl.org/dc/terms/source
|
UNDP - HDRO http://hdrstats.undp.org/en/indicators/49806.html
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#DatatypeProperty
|
|
http://aims.fao.org/aos/geopolitical.owl#sourceIdentifier
|
http://hdrstats.undp.org/en/indicators/49806.html |
| http://hdrstats.undp.org/en/indicators/49806.html |
| http://hdrstats.undp.org/es/indicadores/49806.html |
| http://hdrstats.undp.org/fr/indicateurs/49806.html
|
|
http://aims.fao.org/aos/geopolitical.owl#sourceCreator
|
UNDP - HDRO
|
http://purl.obolibrary.org/obo/IAO_0000144 |
|
http://purl.obolibrary.org/obo/IAO_0000117
|
Person:Alan Ruttenberg
|
|
http://purl.obolibrary.org/obo/IAO_0000412
|
http://purl.obolibrary.org/obo/iao.owl
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
A textual entity that expresses the results of reasoning about a problem, for instance as typically found towards the end of scientific papers.
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
Conclusion Textual Entity
|
|
http://purl.obolibrary.org/obo/IAO_0000116
|
2009/09/28 Alan Ruttenberg. Fucoidan-use-case |
| 2009/10/23 Alan Ruttenberg: We need to work on the definition still
|
|
http://purl.obolibrary.org/obo/IAO_0000114
|
http://purl.obolibrary.org/obo/IAO_0000120
|
|
http://purl.obolibrary.org/obo/IAO_0000111
|
conclusion textual entity
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
that fucoidan has a small statistically significant effect on AT3 level but no useful clinical effect as in-vivo anticoagulant, a paraphrase of part of the last paragraph of the discussion section of the paper 'Pilot clinical study to evaluate the anticoagulant activity of fucoidan', by Lowenthal et. al.PMID:19696660
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
http://purl.obolibrary.org/obo/IAO_0000030
|
http://purl.obolibrary.org/obo/ERO_0000395 |
|
http://purl.obolibrary.org/obo/IAO_0000119
|
http://neurolex.org/wiki/Category:Analysis_service_resource
|
|
http://purl.obolibrary.org/obo/IAO_0000117
|
PERSON: Nicole Vasilevsky
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
Material Analysis Service
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
An analysis service offering that describes a service in which the consumer provides some input material and a service provider performs some analysis of this material to generate data that is returned to the service consumer.
|
|
http://purl.obolibrary.org/obo/IAO_0000114
|
http://purl.obolibrary.org/obo/IAO_0000120
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
Flow cytometry analysis of T cells.
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#comment
|
Coordinate with NIF: NIF ID: nlx_res_20090420
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
http://purl.obolibrary.org/obo/ERO_0001261
|
http://purl.obolibrary.org/obo/ERO_0000396 |
|
http://purl.obolibrary.org/obo/IAO_0000119
|
http://neurolex.org/wiki/Category:Material_service_resource
|
|
http://purl.obolibrary.org/obo/IAO_0000117
|
PERSON: Matthew Brush
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
A material processing service offering that describes a service in which the provider makes physical changes to a specified input material that produce a new entity as specified output that is returned the service consumer. The specified output of a material production service can be contained within, derived from, or synthesized from specified input materials, but it represents a material entity that is of a distinct type from any of the specified input materials.
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
Material Production Service
|
|
http://purl.obolibrary.org/obo/IAO_0000114
|
http://purl.obolibrary.org/obo/IAO_0000120
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
Production of monoclonal antibodies from a hybridoma.
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#comment
|
Coordinate with NIF. NIF ID: nlx_res_20090418
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
http://purl.obolibrary.org/obo/ERO_0000394
|
http://purl.obolibrary.org/obo/OBI_0000643 |
|
http://purl.obolibrary.org/obo/IAO_0000119
|
PAPER: Granularity, scale and collectivity: When size does and does not matter, Alan Rector, Jeremy Rogers, Thomas Bittner, Journal of Biomedical Informatics 39 (2006) 333-349
|
|
http://purl.obolibrary.org/obo/IAO_0000117
|
PERSON: Alan Ruttenberg
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
the relation of the cells in the finger of the skin to the finger, in which an indeterminate number of grains are parts of the whole by virtue of being grains in a collective that is part of the whole, and in which removing one granular part does not nec- essarily damage or diminish the whole. Ontological Whether there is a fixed, or nearly fixed number of parts - e.g. fingers of the hand, chambers of the heart, or wheels of a car - such that there can be a notion of a single one being missing, or whether, by contrast, the number of parts is indeterminate - e.g., cells in the skin of the hand, red cells in blood, or rubber molecules in the tread of the tire of the wheel of the car.
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
has grain
|
|
http://purl.obolibrary.org/obo/IAO_0000412
|
http://purl.obolibrary.org/obo/obi_webservice.owl
|
|
http://purl.obolibrary.org/obo/IAO_0000116
|
Discussion in Karslruhe with, among others, Alan Rector, Stefan Schulz, Marijke Keet, Melanie Courtot, and Alan Ruttenberg. Definition take from the definition of granular parthood in the cited paper. Needs work to put into standard form
|
|
http://purl.obolibrary.org/obo/IAO_0000111
|
has grain
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#ObjectProperty
|
|
http://www.w3.org/2000/01/rdf-schema#subPropertyOf
|
http://purl.obolibrary.org/obo/BFO_0000051
|
http://aims.fao.org/aos/geopolitical.owl#GDP |
|
http://purl.org/dc/terms/description
|
GDP at purchaser's prices is the sum of gross value added by all resident producers in the economy plus any product taxes and minus any subsidies not included in the value of the products. It is calculated without making deductions for depreciation of fabricated assets or for depletion and degradation of natural resources. Data are in current U.S. dollars. Dollar figures for GDP are converted from domestic currencies using single year official exchange rates. For a few countries where the official exchange rate does not reflect the rate effectively applied to actual foreign exchange transactions, an alternative conversion factor is used. Source: World Bank national accounts data, and OECD National Accounts data files. http://data.worldbank.org/indicator/NY.GDP.MKTP.CD
|
|
http://aims.fao.org/aos/geopolitical.owl#sourceModified
|
2010-12-16
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
GDP
|
|
http://purl.org/dc/terms/source
|
World Bank http://data.worldbank.org/indicator/NY.GDP.MKTP.CD
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#DatatypeProperty
|
|
http://aims.fao.org/aos/geopolitical.owl#sourceIdentifier
|
http://data.albankaldawli.org/indicator/NY.GDP.MKTP.CD |
| http://data.worldbank.org/indicator/NY.GDP.MKTP.CD |
| http://datos.bancomundial.org/indicador/NY.GDP.MKTP.CD |
| http://donnees.banquemondiale.org/indicateur/NY.GDP.MKTP.CD |
| http://data.worldbank.org/indicator/NY.GDP.MKTP.CD
|
|
http://aims.fao.org/aos/geopolitical.owl#sourceCreator
|
World Bank
|
http://purl.obolibrary.org/obo/ERO_0000774 |
|
http://purl.obolibrary.org/obo/IAO_0000119
|
PERSON: Melissa Haendel
|
|
http://www.w3.org/2000/01/rdf-schema#range
|
http://www.w3.org/2001/XMLSchema#string
|
|
http://purl.obolibrary.org/obo/IAO_0000117
|
PERSON: Melissa Haendel
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
has eligibility requirement
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
Requirements for research opportunity eligibility. Requirements include: coursework, minimum gradepoint average, state residency, under-represented group status, field of study, or matriculation status.
|
|
http://www.w3.org/2000/01/rdf-schema#domain
|
http://purl.obolibrary.org/obo/ERO_0000595
|
|
http://purl.obolibrary.org/obo/IAO_0000114
|
http://purl.obolibrary.org/obo/IAO_0000120
|
|
http://purl.obolibrary.org/obo/IAO_0000111
|
has eligibility requirement
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
A grade point average above 3.5 is an eligibility requirement.
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#DatatypeProperty
|
http://aims.fao.org/aos/geopolitical.owl#landArea |
|
http://purl.org/dc/terms/description
|
Land area is the total area of the country excluding area under inland water bodies. Possible variations in the data may be due to updating and revisions of the country data and not necessarily to any change of area. Data are expressed in 1 000 hectares. http://faostat.fao.org/site/375/default.aspx
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
land area
|
|
http://aims.fao.org/aos/geopolitical.owl#sourceModified
|
2011-07-21
|
|
http://purl.org/dc/terms/source
|
FAOSTAT http://faostat.fao.org/DesktopDefault.aspx?PageID=377&lang=en#ancor
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#DatatypeProperty
|
|
http://aims.fao.org/aos/geopolitical.owl#sourceIdentifier
|
http://faostat.fao.org/DesktopDefault.aspx?PageID=377&lang=en#ancor |
| http://faostat.fao.org/DesktopDefault.aspx?PageID=377&lang=es#ancor |
| http://faostat.fao.org/DesktopDefault.aspx?PageID=377&lang=en#ancor |
| http://faostat.fao.org/DesktopDefault.aspx?PageID=377&lang=fr#ancor
|
|
http://aims.fao.org/aos/geopolitical.owl#sourceCreator
|
FAOSTAT
|
http://purl.obolibrary.org/obo/OBI_0000293 |
|
http://purl.obolibrary.org/obo/IAO_0000117
|
PERSON: Melanie Coutot |
| PERSON: Bjoern Peters |
| PERSON: Alan Ruttenberg |
| PERSON: Larry Hunter
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
has specified input
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
A relation between a planned process and a continuant participating in that process that is not created during the process. The presence of the continuant during the process is explicitly specified in the plan specification which the process realizes the concretization of.
|
|
http://purl.obolibrary.org/obo/IAO_0000116
|
8/17/09: specified inputs of one process are not necessarily specified inputs of a larger process that it is part of. This is in contrast to how 'has participant' works.
|
|
http://www.w3.org/2000/01/rdf-schema#domain
|
http://purl.obolibrary.org/obo/OBI_0000011
|
|
http://purl.obolibrary.org/obo/IAO_0000111
|
has_specified_input
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
see is_input_of example_of_usage
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#ObjectProperty
|
|
http://www.w3.org/2000/01/rdf-schema#subPropertyOf
|
http://purl.obolibrary.org/obo/RO_0002233
|
http://purl.obolibrary.org/obo/IAO_0000221 |
|
http://www.w3.org/2000/01/rdf-schema#range
|
http://purl.obolibrary.org/obo/BFO_0000019
|
|
http://purl.obolibrary.org/obo/IAO_0000117
|
Alan Ruttenberg
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
is quality measurement of
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
m is a quality measurement of q at t when
q is a quality
there is a measurement process p that has specified output m, a measurement datum, that is about q
|
|
http://purl.obolibrary.org/obo/IAO_0000116
|
This one is the one we are struggling with at the moment. The issue is what a measurement measures. On the one hand saying that it measures the quality would include it "measuring" the bearer = referring to the bearer in the measurement. However this makes comparisons of two different things not possible. On the other hand not having it inhere in the bearer, on the face of it, breaks the audit trail.
Werner suggests a solution based on "Magnitudes" a proposal for which we are awaiting details. |
| 8/6/2009 Alan Ruttenberg: The strategy is to be rather specific with this relationship. There are other kinds of measurements that are not of qualities, such as those that measure time. We will add these as separate properties for the moment and see about generalizing later |
| From the second meeting on IAO:
An attempt at defining assay using Barry's "reliability" wording
assay:
process and has_input some material entity
and has_output some information content entity
and which is such that instances of this process type reliably generate
outputs that describes the input. |
| From the second IAO workshop [Alan Ruttenberg 8/6/2009: not completely current, though bringing in comparison is probably important]
This one is the one we are struggling with at the moment. The issue is what a measurement measures. On the one hand saying that it measures the quality would include it "measuring" the bearer = referring to the bearer in the measurement. However this makes comparisons of two different things not possible. On the other hand not having it inhere in the bearer, on the face of it, breaks the audit trail.
Werner suggests a solution based on "Magnitudes" a proposal for which we are awaiting details.
--
From the second IAO workshop, various comments, [commented on by Alan Ruttenberg 8/6/2009]
unit of measure is a quality, e.g. the length of a ruler.
[We decided to hedge on what units of measure are, instead talking about measurement unit labels, which are the information content entities that are about whatever measurement units are. For IAO we need that information entity in any case. See the term measurement unit label]
[Some struggling with the various subflavors of is_about. We subsequently removed the relation represents, and describes until and only when we have a better theory]
a represents b means either a denotes b or a describes
describe:
a describes b means a is about b and a allows an inference of at least one quality of b
We have had a long discussion about denotes versus describes. |
| From the second IAO workshop: An attempt at tieing the quality to the measurement datum more carefully.
a is a magnitude means a is a determinate quality particular inhering in some bearer b existing at a time t that can be represented/denoted by an information content entity e that has parts denoting a unit of measure, a number, and b. The unit of measure is an instance of the determinable quality.
|
|
http://www.w3.org/2000/01/rdf-schema#domain
|
http://purl.obolibrary.org/obo/IAO_0000109
|
|
http://www.w3.org/2002/07/owl#inverseOf
|
http://purl.obolibrary.org/obo/IAO_0000417
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#ObjectProperty
|
|
http://www.w3.org/2000/01/rdf-schema#subPropertyOf
|
http://purl.obolibrary.org/obo/IAO_0000136
|
http://purl.obolibrary.org/obo/BFO_0000054 |
|
http://purl.obolibrary.org/obo/BFO_0000179
|
realized-in
|
|
http://www.w3.org/2000/01/rdf-schema#range
|
http://purl.obolibrary.org/obo/BFO_0000015
|
|
http://purl.obolibrary.org/obo/IAO_0000601
|
if a realizable entity b is realized in a process p, then p stands in the has_participant relation to the bearer of b. (axiom label in BFO2 Reference: [106-002])
|
|
http://purl.obolibrary.org/obo/IAO_0000602
|
(forall (x y z t) (if (and (RealizableEntity x) (Process y) (realizesAt y x t) (bearerOfAt z x t)) (hasParticipantAt y z t))) // axiom label in BFO2 CLIF: [106-002]
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
realized in
|
|
http://purl.obolibrary.org/obo/IAO_0000600
|
[copied from inverse property 'realizes'] to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])
|
|
http://www.w3.org/2000/01/rdf-schema#domain
|
http://purl.obolibrary.org/obo/BFO_0000017
|
|
http://www.w3.org/2002/07/owl#inverseOf
|
http://purl.obolibrary.org/obo/BFO_0000055
|
|
http://www.w3.org/2000/01/rdf-schema#isDefinedBy
|
http://purl.obolibrary.org/obo/bfo.owl
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#ObjectProperty
|
|
http://purl.obolibrary.org/obo/BFO_0000180
|
realizedIn
|
http://purl.org/spar/fabio/Comment |
|
http://www.w3.org/2000/01/rdf-schema#label
|
Comment
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
A verbal or written remark concerning some entity. In written form, a comment is often appended to that entity and termed an annotation. Within computer programs or ontologies, comments are added to enhance human understanding, and are usually prefaced by a special syntactic symbol that ensures they are ignored during execution of the program.
has super-classes |
| A verbal or written remark concerning some entity. In written form, a comment is often appended to that entity and termed an annotation. Within computer programs or ontologies, comments are added to enhance human understanding, and are usually prefaced by
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
http://purl.org/ontology/bibo/Document
|
http://purl.org/ontology/bibo/Article |
|
http://www.w3.org/2003/06/sw-vocab-status/ns#term_status
|
stable
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
A written composition in prose, usually nonfiction, on a specific topic, forming an independent part of a periodical or book
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
Article
|
|
http://www.w3.org/2000/01/rdf-schema#isDefinedBy
|
http://purl.org/ontology/bibo/
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
Short Definition modified from the bibo ontology. |
| A specific journal article
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#comment
|
A written composition in prose, usually nonfiction, on a specific topic, forming an independent part of a book or other publication, as a newspaper or magazine.
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
_:146 |
| http://purl.org/ontology/bibo/Document |
| _:147 |
| _:63
|
http://purl.org/NET/c4dm/event.owl#Event |
|
http://purl.obolibrary.org/obo/IAO_0000115
|
Something that happens at a given place and time.
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
Event
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
Only use if no specific subclasses of event:Event are appropriate. |
| This class will also display instances of subclasses under Event, e.g. Philosophy Department Discussion Club; 2009 Racker Lecture; screening of a documentary. In addition to a location in space and time, an event may have any or all the following qualities: actively participating agents, passive factors, work products. Also, it may be in a virtual space or part of a series such as a lecture series.
The previous short definition was: "An arbitrary classification of a space/time region, by a cognitive agent."
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
http://purl.obolibrary.org/obo/BFO_0000015 |
| _:250 |
| _:251 |
| _:252 |
| _:253 |
| _:254 |
| _:255 |
| _:256
|
http://xmlns.com/foaf/0.1/Group |
|
http://purl.obolibrary.org/obo/IAO_0000117
|
PERSON: Scott Hoffmann
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
A collection of individual agents. |
| A collection of individual agents (and may itself play the role of a Agent, ie. something that can perform actions).
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
Group
|
|
http://purl.obolibrary.org/obo/IAO_0000111
|
group
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
A group can also be an organization but need not be; typically used for looser associations of people or organizations acting together in some fashion, not necessarily through formal agreement or on a long-term basis. Added to the VIVO ontology to be able to support informal and perhaps even private groups of people around an idea, funding opportunity, or event.
see: http://xmlns.com/foaf/spec/#term_Group
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#comment
|
A group
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
http://xmlns.com/foaf/0.1/Agent
|
http://vivoweb.org/ontology/core#ReviewerRole |
|
http://www.w3.org/2000/01/rdf-schema#label
|
Reviewer Role
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
A role that encompasses both ongoing reviewer responsibility for a bibo:Collection, such as a Journal or Series, and also a review performed for a bibo:Document, such as a book, academic article or conference paper.
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
A role that encompasses both ongoing reviewer responsibility for a bibo:Collection, such as a Journal or Series, and also a review performed for a bibo:Document, such as a book, academic article or conference paper.
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
http://purl.obolibrary.org/obo/BFO_0000023
|
http://purl.obolibrary.org/obo/OBI_0100026 |
|
http://purl.obolibrary.org/obo/IAO_0000119
|
WEB: http://en.wikipedia.org/wiki/Organism
|
|
http://purl.obolibrary.org/obo/IAO_0000117
|
GROUP: OBI Biomaterial Branch
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
A material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment. An organism may be unicellular or made up, like humans, of many billions of cells divided into specialized tissues and organs.
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
Organism
|
|
http://purl.obolibrary.org/obo/IAO_0000412
|
http://purl.obolibrary.org/obo/obi.owl
|
|
http://purl.obolibrary.org/obo/IAO_0000114
|
http://purl.obolibrary.org/obo/IAO_0000121
|
|
http://purl.obolibrary.org/obo/IAO_0000111
|
organism
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
animal |
| fungus |
| plant |
| virus
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
http://purl.obolibrary.org/obo/BFO_0000040
|
http://purl.obolibrary.org/obo/ERO_0000595 |
|
http://purl.obolibrary.org/obo/IAO_0000119
|
PERSON: Nicole Vasilevsky
|
|
http://purl.obolibrary.org/obo/IAO_0000117
|
PERSON: Nicole Vasilevsky
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
A planned process carried out by a person or organization with the objective of performing research. |
| An offering through an ongoing program or single request of research support: internships, positions, financial awards or other forms of tangible or intangible support
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
Research Opportunity
|
|
http://purl.obolibrary.org/obo/IAO_0000114
|
http://purl.obolibrary.org/obo/IAO_0000120
|
|
http://purl.obolibrary.org/obo/IAO_0000111
|
student research opportunity
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
Training grant to perform post-doctoral research.
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
_:65 |
| _:424 |
| http://purl.obolibrary.org/obo/BFO_0000017 |
| _:425 |
| _:426
|
http://xmlns.com/foaf/0.1/Organization |
|
http://www.w3.org/2004/02/skos/core#scopeNote
|
Ued to describe an organization related to bibliographic items such as a publishing company, etc.
|
|
http://purl.obolibrary.org/obo/IAO_0000117
|
PERSON: Scott Hoffmann
|
|
http://purl.obolibrary.org/obo/IAO_0000118
|
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
A generic class encompassing several types of organizations. |
| A kind of Agent corresponding to social instititutions such as companies, societies etc.
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
Organization
|
|
http://purl.obolibrary.org/obo/IAO_0000111
|
organization
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
Only use if no specific subclasses of foaf:organization desribe the organization. |
| This class will display all the instances in the subclasses below it, as well as any organizations that were added as part of this generic class because there wasn't a specific class available.
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#comment
|
An organization
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
_:462 |
| http://xmlns.com/foaf/0.1/Agent |
| _:91 |
| _:233 |
| _:463 |
| _:464
|
http://purl.obolibrary.org/obo/IAO_0000005 |
|
http://purl.obolibrary.org/obo/IAO_0000119
|
OBI Plan and Planned Process/Roles Branch |
| OBI_0000217
|
|
http://purl.obolibrary.org/obo/IAO_0000117
|
PERSON: Barry Smith |
| PERSON: Bjoern Peters |
| PERSON: Alan Ruttenberg |
| PERSON: Jennifer Fostel
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
Objective Specification
|
|
http://purl.obolibrary.org/obo/IAO_0000412
|
http://purl.obolibrary.org/obo/iao.owl
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
a directive information entity that describes an intended process endpoint. When part of a plan specification the concretization is realized in a planned process in which the bearer tries to effect the world so that the process endpoint is achieved.
|
|
http://purl.obolibrary.org/obo/IAO_0000116
|
Answers the question, why did you do this experiment?
|
|
http://purl.obolibrary.org/obo/IAO_0000114
|
http://purl.obolibrary.org/obo/IAO_0000125
|
|
http://purl.obolibrary.org/obo/IAO_0000111
|
objective specification
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
purpose of a study; support of hypothesis, discovery of new information
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
http://purl.obolibrary.org/obo/IAO_0000033
|
http://purl.obolibrary.org/obo/IAO_0000003 |
|
http://purl.obolibrary.org/obo/IAO_0000117
|
PERSON: Alan Ruttenberg |
| PERSON: Melanie Courtot
|
|
http://purl.obolibrary.org/obo/IAO_0000412
|
http://purl.obolibrary.org/obo/iao.owl
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
Measurement Unit Label
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
A measurement unit label is as a label that is part of a scalar measurement datum and denotes a unit of measure.
|
|
http://purl.obolibrary.org/obo/IAO_0000116
|
2009-03-16: review of this term done during during the OBI workshop winter 2009 and the current definition was considered acceptable for use in OBI. If there is a need to modify this definition please notify OBI. |
| 2009-03-16: provenance: a term measurement unit was
proposed for OBI (OBI_0000176) , edited by Chris Stoeckert and
Cristian Cocos, and subsequently moved to IAO where the objective for
which the original term was defined was satisfied with the definition
of this, different, term.
|
|
http://purl.obolibrary.org/obo/IAO_0000114
|
http://purl.obolibrary.org/obo/IAO_0000125
|
|
http://purl.obolibrary.org/obo/IAO_0000111
|
measurement unit label
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
Examples of measurement unit labels are liters, inches, weight per volume.
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
http://purl.obolibrary.org/obo/IAO_0000009
|
http://purl.org/ontology/bibo/Document |
|
http://purl.obolibrary.org/obo/IAO_0000117
|
PERSON: Lawrence Hunter
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
A collection of information content entities intended to be understood together as a whole |
| A bounded physical representation of a body of information designed with the capacity (and usually intent) to communicate
|
|
http://purl.obolibrary.org/obo/IAO_0000412
|
http://purl.obolibrary.org/obo/iao.owl
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
Document
|
|
http://purl.obolibrary.org/obo/IAO_0000114
|
http://purl.obolibrary.org/obo/IAO_0000120
|
|
http://purl.obolibrary.org/obo/IAO_0000111
|
document
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
Short Definition from the bibo ontology |
| A journal article, patent application, laboratory notebook, or a book
|
|
http://www.w3.org/2000/01/rdf-schema#isDefinedBy
|
http://purl.org/ontology/bibo/
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#comment
|
A document (noun) is a bounded physical representation of body of information designed with the capacity (and usually intent) to communicate. A document may manifest symbolic, diagrammatic or sensory-representational information.
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
_:101 |
| _:478 |
| _:479 |
| _:480 |
| http://purl.obolibrary.org/obo/IAO_0000030 |
| _:258 |
| _:389
|
http://vivoweb.org/ontology/core#Facility |
|
http://www.w3.org/2000/01/rdf-schema#label
|
Facility
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
Something designed, built, installed, etc., to serve a specific function or activity affording a convenience or service.
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
Use subclasses of core:Facility subclasses instead of this class if possible |
| Distinct from the organization that runs it; e.g., a laboratory may be an organization but may be run by another organization and only consist of facilities housing equipment or services. Can be a building or place that provides a particular service or is used for a particular activity. Use the specific Building or Room whenever possible. Short definition from http://dictionary.reference.com/browse/facility.
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
_:495 |
| _:496 |
| http://purl.obolibrary.org/obo/BFO_0000029
|
http://purl.obolibrary.org/obo/OBI_0000011 |
|
http://purl.obolibrary.org/obo/IAO_0000119
|
branch derived
|
|
http://purl.obolibrary.org/obo/IAO_0000117
|
Bjoern Peters
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
Planned Process
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
A processual entity that realizes a plan which is the concretization of a plan specification.
|
|
http://purl.obolibrary.org/obo/IAO_0000412
|
http://purl.obolibrary.org/obo/obi.owl
|
|
http://purl.obolibrary.org/obo/IAO_0000116
|
'Plan' includes a future direction sense. That can be problematic if plans are changed during their execution. There are however implicit contingencies for protocols that an agent has in his mind that can be considered part of the plan, even if the agent didn't have them in mind before. Therefore, a planned process can diverge from what the agent would have said the plan was before executing it, by adjusting to problems encountered during execution (e.g. choosing another reagent with equivalent properties, if the originally planned one has run out.)
|
|
http://purl.obolibrary.org/obo/IAO_0000114
|
http://purl.obolibrary.org/obo/IAO_0000122
|
|
http://purl.obolibrary.org/obo/IAO_0000111
|
planned process |
| planned process
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
Injecting mice with a vaccine in order to test its efficacy
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
http://purl.obolibrary.org/obo/BFO_0000015
|
http://purl.org/ontology/bibo/DocumentStatus |
|
http://www.w3.org/2003/06/sw-vocab-status/ns#term_status
|
stable
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
Document Status
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
The status of a document with respect to its publication.
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
The status of a document with respect to its publication. The statuses are represented as individuals of this class. Use the "show all individuals of this class" button on the class control panel to see the currently defined statuses. |
| submitted; accepted; in-press; published; invited; refereed.
|
|
http://www.w3.org/2000/01/rdf-schema#isDefinedBy
|
http://purl.org/ontology/bibo/
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#comment
|
The status of the publication of a document.
|
http://purl.obolibrary.org/obo/ERO_0000071 |
|
http://purl.obolibrary.org/obo/IAO_0000119
|
http://en.wikipedia.org/wiki/Computer_software
|
|
http://purl.obolibrary.org/obo/IAO_0000117
|
PERSON: Melissa Haendel
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
A general term primarily used for digitally stored data such as computer programs and other kinds of information read and written by computers.
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
Software
|
|
http://purl.obolibrary.org/obo/IAO_0000114
|
http://purl.obolibrary.org/obo/IAO_0000120
|
|
http://purl.obolibrary.org/obo/IAO_0000111
|
software
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
Microsoft Word is commonly used word processing software.
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#comment
|
IAO is a planned specification, in SWO is an Information artifact. In eagle-i, we have a need to collect material instances and is it thus currently classified as a material entity.
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
http://purl.obolibrary.org/obo/BFO_0000040
|
http://purl.obolibrary.org/obo/ERO_0000020 |
|
http://purl.obolibrary.org/obo/IAO_0000119
|
http://en.wikipedia.org/wiki/Specimen
|
|
http://purl.obolibrary.org/obo/IAO_0000117
|
PERSON: Melissa Haendel
|
|
http://purl.obolibrary.org/obo/IAO_0000118
|
biospecimen
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
Biological Specimen
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
Material entity that is a portion or quantity of a biological material for use in testing, examination, or study. A biological specimen can be an individual animal, a population of organisms, or is a part of or derived from an animal, plant, part of a plant, or microorganism. When a taxon is described, it is typically based on a single specimen and is referred to as the holotype.
|
|
http://purl.obolibrary.org/obo/IAO_0000114
|
http://purl.obolibrary.org/obo/IAO_0000120
|
|
http://purl.obolibrary.org/obo/IAO_0000111
|
biological specimen
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
Heart tissue obtained from an organism.
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#comment
|
Should have relationship to Organism
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
_:121 |
| http://purl.obolibrary.org/obo/BFO_0000040
|
http://purl.obolibrary.org/obo/ERO_0000005 |
|
http://purl.obolibrary.org/obo/IAO_0000119
|
PERSON: Melissa Haendel
|
|
http://purl.obolibrary.org/obo/IAO_0000117
|
PERSON: Melissa Haendel
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
Service
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
An information content entity that describes a service performed by a person or organization with the objective of performing a technique, providing training, providing storage of data or material entities, or providing access to resources for another person or organization
|
|
http://purl.obolibrary.org/obo/IAO_0000114
|
http://purl.obolibrary.org/obo/IAO_0000120
|
|
http://purl.obolibrary.org/obo/IAO_0000111
|
service
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
A DNA sequencing service performed by a core lab.
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#comment
|
Coordinate with NIF. NIF ID: nlx_res_20090105
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
http://purl.obolibrary.org/obo/IAO_0000030
|
http://purl.obolibrary.org/obo/ERO_0000016 |
|
http://purl.obolibrary.org/obo/IAO_0000119
|
http://en.wikipedia.org/wiki/Clinical_trial
|
|
http://purl.obolibrary.org/obo/IAO_0000117
|
PERSON: Nicole Vasilevsky
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
An interventional study that contains a set of procedures in medical research and drug development that are conducted to allow safety (or more specifically, information about adverse drug reactions and adverse effects of other treatments) and efficacy data to be collected for health interventions (e.g., drugs, diagnostics, devices, therapy protocols) that is performed over phases.
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
Clinical Trial
|
|
http://purl.obolibrary.org/obo/IAO_0000114
|
http://purl.obolibrary.org/obo/IAO_0000120
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
A clinical trial to evaluate the efficacy of a new drug.
|
|
http://www.w3.org/2002/07/owl#equivalentClass
|
_:600
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
http://purl.org/net/OCRe/research.owl#Interventional_study
|
http://purl.org/net/OCRe/study_design.owl#OCRE100038 |
|
http://purl.obolibrary.org/obo/IAO_0000117
|
Simona
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
Phase
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
Phase describes the level of a trial required of drugs before (and after) they are routinely used in clinical practice:
- Phase I trials assess toxic effects on humans (not many people participate in them, and usually without controls);
- Phase ll trials assess therapeutic benefit (usually involving a few hundred people, usually with controls, but not always);
- Phase III trials compare the new treatment against standard (or placebo) treatment (usually a full randomised controlled trial). At this point, a drug can be approved for community use.
- Phase IV monitors a new treatment in the community, often to evaluate longterm safety and effectiveness. [Glossary of Terms in The Cochrane Collaboration]
A trial can be of a combination phase (e.g., I/II).
The concept of phase is not applicable to trials studying certain interventions (e.g., device, procedure, behavioral)
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
http://purl.obolibrary.org/obo/BFO_0000015
|
http://purl.obolibrary.org/obo/IAO_0000109 |
|
http://purl.obolibrary.org/obo/IAO_0000119
|
group:OBI |
| OBI_0000305
|
|
http://purl.obolibrary.org/obo/IAO_0000117
|
person:Chris Stoeckert
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
A measurement datum is an information content entity that is a recording of the output of a measurement such as produced by a device.
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
Measurement Datum
|
|
http://purl.obolibrary.org/obo/IAO_0000116
|
2/2/2009 is_specified_output of some assay?
|
|
http://purl.obolibrary.org/obo/IAO_0000114
|
http://purl.obolibrary.org/obo/IAO_0000120
|
|
http://purl.obolibrary.org/obo/IAO_0000111
|
measurement datum
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
Examples of measurement data are the recoding of the weight of a mouse as {40,mass,"grams"}, the recording of an observation of the behavior of the mouse {,process,"agitated"}, the recording of the expression level of a gene as measured through the process of microarray experiment {3.4,luminosity,}.
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
http://purl.obolibrary.org/obo/IAO_0000027
|
http://purl.obolibrary.org/obo/IAO_0000104 |
|
http://purl.obolibrary.org/obo/IAO_0000119
|
OBI_0000344 |
| OBI Plan and Planned Process branch
|
|
http://purl.obolibrary.org/obo/IAO_0000117
|
Alan Ruttenberg
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
a directive information entity that when concretized it is realized in a process in which the bearer tries to achieve the objectives, in part by taking the actions specified. Plan specifications includes parts such as objective specification, action specifications and conditional specifications.
|
|
http://purl.obolibrary.org/obo/IAO_0000412
|
http://purl.obolibrary.org/obo/iao.owl
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
Plan Specification
|
|
http://purl.obolibrary.org/obo/IAO_0000116
|
2009-03-16: provenance: a term a plan was proposed for OBI (OBI_0000344) , edited by the PlanAndPlannedProcess branch. Original definition was " a plan is a specification of a process that is realized by an actor to achieve the objective specified as part of the plan". It has been subsequently moved to IAO where the objective for which the original term was defined was satisfied with the definitionof this, different, term. |
| Alternative previous definition: a plan is a set of instructions that specify how an objective should be achieved
|
|
http://purl.obolibrary.org/obo/IAO_0000114
|
http://purl.obolibrary.org/obo/IAO_0000120
|
|
http://purl.obolibrary.org/obo/IAO_0000111
|
plan specification
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
PMID: 18323827.Nat Med. 2008 Mar;14(3):226.New plan proposed to help resolve conflicting medical advice.
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
http://purl.obolibrary.org/obo/IAO_0000033
|
http://purl.obolibrary.org/obo/IAO_0000136 |
|
http://purl.obolibrary.org/obo/IAO_0000119
|
Smith, Ceusters, Ruttenberg, 2000 years of philosophy
|
|
http://purl.obolibrary.org/obo/IAO_0000117
|
person:Alan Ruttenberg
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
is_about is a (currently) primitive relation that relates an information artifact to an entity.
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
is about
|
|
http://purl.obolibrary.org/obo/IAO_0000116
|
7/6/2009 Alan Ruttenberg. Following discussion with Jonathan Rees, and introduction of "mentions" relation. Weaken the is_about relationship to be primitive.
We will try to build it back up by elaborating the various subproperties that are more precisely defined.
Some currently missing phenomena that should be considered "about" are predications - "The only person who knows the answer is sitting beside me" , Allegory, Satire, and other literary forms that can be topical without explicitly mentioning the topic.
|
|
http://www.w3.org/2000/01/rdf-schema#domain
|
http://purl.obolibrary.org/obo/IAO_0000030
|
|
http://purl.obolibrary.org/obo/IAO_0000114
|
http://purl.obolibrary.org/obo/IAO_0000125
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
This document is about information artifacts and their representations
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#ObjectProperty
|
http://vivoweb.org/ontology/core#Authorship |
|
http://www.w3.org/2000/01/rdf-schema#label
|
Authorship
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
Contains the authors name, their rank in the publication, and whether or not they are a corresponding author on the publication.
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
Authorship of journal articles, books and other original works is a means by which academics communicate the results of their scholarly work, establish priority for their discoveries, and build their reputation among their peers.
This class allows for linking an author to a publication while indicating information about that author's authorship. |
| Currently any abstract name is given to members of this class. This could change in the future.
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#comment
|
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
http://vivoweb.org/ontology/core#Relationship |
| _:423 |
| _:652 |
| _:653
|
http://purl.org/ontology/bibo/Patent |
|
http://www.w3.org/2003/06/sw-vocab-status/ns#term_status
|
stable
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
Patent
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
(from BIBO) A document describing the exclusive right granted by a government to an inventor to manufacture, use, or sell an invention for a certain number of years
|
|
http://www.w3.org/2000/01/rdf-schema#isDefinedBy
|
http://purl.org/ontology/bibo/
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
A patent is an exclusive right granted for an invention, which is a product or a process that provides, in general, a new way of doing something, or offers a new technical solution to a problem. In order to be patentable, the invention must fulfill certain conditions. (http://www.wipo.int/patentscope/en/)
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#comment
|
A document describing the exclusive right granted by a government to an inventor to manufacture, use, or sell an invention for a certain number of years.
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
_:589 |
| _:657 |
| http://purl.org/ontology/bibo/Document
|
http://vivoweb.org/ontology/core#Company |
|
http://www.w3.org/2000/01/rdf-schema#label
|
Company
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
A legally-recognized business organization |
| A legally-recognized business organization.
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
from Wikipedia: "A company is a form of business organization. It is an association or collection of individual real persons and/or other companies ... This collection, group or association of persons can be made to exist in law and then a company is itself considered a "legal person". The name company arose because, at least originally, it represented or was owned by more than one real or legal person."
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
http://xmlns.com/foaf/0.1/Organization
|
http://purl.obolibrary.org/obo/IAO_0000027 |
|
http://purl.obolibrary.org/obo/IAO_0000117
|
PERSON: Chris Stoeckert |
| PERSON: Alan Ruttenberg |
| PERSON: Jonathan Rees
|
|
http://purl.obolibrary.org/obo/IAO_0000118
|
data
|
|
http://purl.obolibrary.org/obo/IAO_0000412
|
http://purl.obolibrary.org/obo/iao.owl
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
Data Item
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
a data item is an information content entity that is intended to be a truthful statement about something (modulo, e.g., measurement precision or other systematic errors) and is constructed/acquired by a method which reliably tends to produce (approximately) truthful statements.
|
|
http://purl.obolibrary.org/obo/IAO_0000116
|
2009-03-16: data item deliberatly ambiguous: we merged data set and datum to be one entity, not knowing how to define singular versus plural. So data item is more general than datum. |
| 2009-03-16: removed datum as alternative term as datum specifically refers to singular form, and is thus not an exact synonym. |
| 2/2/2009 Alan and Bjoern discussing FACS run output data. This is a data item because it is about the cell population. Each element records an event and is typically further composed a set of measurment data items that record the fluorescent intensity stimulated by one of the lasers. |
| JAR: datum -- well, this will be very tricky to define, but maybe some
information-like stuff that might be put into a computer and that is
meant, by someone, to denote and/or to be interpreted by some
process... I would include lists, tables, sentences... I think I might
defer to Barry, or to Brian Cantwell Smith
JAR: A data item is an approximately justified approximately true approximate belief
|
|
http://purl.obolibrary.org/obo/IAO_0000114
|
http://purl.obolibrary.org/obo/IAO_0000125
|
|
http://purl.obolibrary.org/obo/IAO_0000111
|
data item
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
Data items include counts of things, analyte concentrations, and statistical summaries.
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
http://purl.obolibrary.org/obo/IAO_0000030
|
http://purl.obolibrary.org/obo/IAO_0000032 |
|
http://purl.obolibrary.org/obo/IAO_0000117
|
PERSON: Alan Ruttenberg |
| PERSON: Melanie Courtot
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
a scalar measurement datum is a measurement datum that is composed of two parts, numerals and a unit label.
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
Scalar Measurement Datum
|
|
http://purl.obolibrary.org/obo/IAO_0000116
|
Would write this as: has_part some 'measurement unit label' and has_part some numeral and has_part exactly 2, except for the fact that this won't let us take advantage of OWL reasoning over the numbers. Instead use has measurment value property to represent the same. Use has measurement unit label (subproperty of has_part) so we can easily say that there is only one of them. |
| 2009-03-16: we decided to keep datum singular in scalar measurement datum, as in
this case we explicitly refer to the singular form
|
|
http://purl.obolibrary.org/obo/IAO_0000114
|
http://purl.obolibrary.org/obo/IAO_0000120
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
10 feet. 3 ml.
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
http://purl.obolibrary.org/obo/IAO_0000109
|
http://purl.obolibrary.org/obo/IAO_0000033 |
|
http://purl.obolibrary.org/obo/IAO_0000117
|
PERSON: Bjoern Peters |
| PERSON: Alan Ruttenberg
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
Directive Information Entity
|
|
http://purl.obolibrary.org/obo/IAO_0000412
|
http://purl.obolibrary.org/obo/iao.owl
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
An information content entity whose concretizations indicate to their bearer how to realize them in a process.
|
|
http://purl.obolibrary.org/obo/IAO_0000116
|
Werner pushed back on calling it realizable information entity as it isn't realizable. However this name isn't right either. An example would be a recipe. The realizable entity would be a plan, but the information entity isn't about the plan, it, once concretized, *is* the plan. -Alan |
| 8/6/2009 Alan Ruttenberg: Changed label from "information entity about a realizable" after discussions at ICBO
|
|
http://purl.obolibrary.org/obo/IAO_0000114
|
http://purl.obolibrary.org/obo/IAO_0000123
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
http://purl.obolibrary.org/obo/IAO_0000030
|
http://purl.obolibrary.org/obo/IAO_0000030 |
|
http://purl.obolibrary.org/obo/IAO_0000119
|
OBI_0000142
|
|
http://purl.obolibrary.org/obo/IAO_0000117
|
PERSON: Chris Stoeckert
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
Information Content Entity
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
an information content entity is an entity that is generically dependent on some artifact and stands in relation of aboutness to some entity |
| The most general classification of an information resource
|
|
http://purl.obolibrary.org/obo/IAO_0000412
|
http://purl.obolibrary.org/obo/iao.owl
|
|
http://purl.obolibrary.org/obo/IAO_0000116
|
information_content_entity 'is_encoded_in' some digital_entity in obi before split (040907). information_content_entity 'is_encoded_in' some physical_document in obi before split (040907).
Previous. An information content entity is a non-realizable information entity that 'is encoded in' some digital or physical entity.
|
|
http://purl.obolibrary.org/obo/IAO_0000114
|
http://purl.obolibrary.org/obo/IAO_0000125
|
|
http://purl.obolibrary.org/obo/IAO_0000111
|
information content entity
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
Examples of information content entites include journal articles, data, graphical layouts, and graphs.
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
_:104 |
| _:680 |
| _:295 |
| http://purl.obolibrary.org/obo/BFO_0000031 |
| _:681 |
| _:470 |
| _:83 |
| _:603 |
| _:547
|
http://purl.org/ontology/bibo/ThesisDegree |
|
http://www.w3.org/2003/06/sw-vocab-status/ns#term_status
|
stable
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
Thesis Degree
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
The academic degree of a Thesis.
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
Doctor of Philosophy (Ph.D.) |
| Different from general academic degree, thesis degree is achieved through one's completed thesis. Thesis is a document submitted in support of candidature for a degree or professional qualification presenting the author's research and findings(http://en.wikipedia.org/wiki/Thesis_or_dissertation).
|
|
http://www.w3.org/2000/01/rdf-schema#isDefinedBy
|
http://purl.org/ontology/bibo/
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#comment
|
The academic degree of a Thesis
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
http://vivoweb.org/ontology/core#AcademicDegree
|
http://purl.obolibrary.org/obo/ERO_0000391 |
|
http://purl.obolibrary.org/obo/IAO_0000119
|
PERSON: Matthew Brush
|
|
http://purl.obolibrary.org/obo/IAO_0000117
|
PERSON: Matt Brush
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
A service offering that describes a service in which the consumer receives the right to use a resource (instrument, database, software, etc) that is owned or managed by a service provider. Ownership of the accessed resource remains with the service provider during and after provision of service.
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
Access Service
|
|
http://purl.obolibrary.org/obo/IAO_0000114
|
http://purl.obolibrary.org/obo/IAO_0000120
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
Allowing access to a microscope in a core lab.
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#comment
|
Coordinate with NIF
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
http://purl.obolibrary.org/obo/ERO_0000005
|
http://purl.obolibrary.org/obo/ERO_0000394 |
|
http://purl.obolibrary.org/obo/IAO_0000119
|
http://neurolex.org/wiki/Category:Production_service_resource
|
|
http://purl.obolibrary.org/obo/IAO_0000117
|
PERSON: Nicole Vasilevsky
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
A service offering that describes a service in which the provider makes physical changes to a specified input material entity with the objective of producing a new material entity form input materials, or modifying the input material entity, and returning this as output to the service consumer
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
Material Processing Service
|
|
http://purl.obolibrary.org/obo/IAO_0000114
|
http://purl.obolibrary.org/obo/IAO_0000120
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
Biopsy service.
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#comment
|
Coordinate with NIF: NIF ID: nlx_res_20090416
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
http://purl.obolibrary.org/obo/ERO_0000005
|
http://purl.org/ontology/bibo/Journal |
|
http://www.w3.org/2003/06/sw-vocab-status/ns#term_status
|
stable
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
Journal
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
Contains original scholarly research or review articles by experts in the field
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
Journal of Information Science; IEEE Intelligent System; Scientometrics |
| Articles usually contain abstracts and bibliographies. Includes peer-reviewed, non-peer-reviewed, and open access journals. Journals are usually indexed in the major academic databases such as PubMed and Web of Science.
|
|
http://www.w3.org/2000/01/rdf-schema#isDefinedBy
|
http://purl.org/ontology/bibo/
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#comment
|
A periodical of scholarly journal Articles.
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
http://purl.org/ontology/bibo/Periodical |
| _:714
|
http://purl.obolibrary.org/obo/ERO_0000778 |
|
http://purl.obolibrary.org/obo/IAO_0000119
|
https://www.google.com/search?q=residency+status&ie=utf-8&oe=utf-8&aq=t&rls=org.mozilla:en-US:official&client=firefox-a#hl=en&client=firefox-a&hs=Bcx&rls=org.mozilla:en-US:official&q=citizen&tbs=dfn:1&tbo=u&sa=X&ei=micXT_DwMIjUiAK15tDUDw&ved=0CCgQkQ4&bav=on.2,or.r_gc.r_pw.,cf.osb&fp=7b67128a22f602af&biw=1609&bih=794
|
|
http://purl.obolibrary.org/obo/IAO_0000117
|
PERSON: Nicole Vasilevsky
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
A US resident role that inheres in an individual who is not a legally recognized subject or national of the United States.
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
Non-US Citizen
|
|
http://purl.obolibrary.org/obo/IAO_0000114
|
http://purl.obolibrary.org/obo/IAO_0000123
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
http://purl.obolibrary.org/obo/ERO_0000776
|
http://purl.obolibrary.org/obo/OBI_0000272 |
|
http://purl.obolibrary.org/obo/IAO_0000119
|
OBI branch derived + wikipedia (http://en.wikipedia.org/wiki/Protocol_%28natural_sciences%29)
|
|
http://purl.obolibrary.org/obo/IAO_0000117
|
PlanAndPlannedProcess Branch
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
Protocol
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
a protocol is a plan specification which has sufficient level of detail and quantitative information to communicate it between domain experts, so that different domain experts will reliably be able to independently reproduce the process.
|
|
http://purl.obolibrary.org/obo/IAO_0000412
|
http://purl.obolibrary.org/obo/obi.owl
|
|
http://purl.obolibrary.org/obo/IAO_0000114
|
http://purl.obolibrary.org/obo/IAO_0000122
|
|
http://purl.obolibrary.org/obo/IAO_0000111
|
Protocol |
| protocol
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
PMID: 18388943.Nat Protoc. 2008;3(4):612-8.Protocol for the induction of arthritis in C57BL/6 mice.
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
http://purl.org/ontology/bibo/Document
|
http://vivoweb.org/ontology/core#GeographicRegion |
|
http://purl.obolibrary.org/obo/IAO_0000115
|
A location having coordinates in geographic space.
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
Geographic Region
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
Use subclasses of core:Geographic Region subclasses instead of this class if possible. |
| Removed the word "stable" because disputed territories from geopolitical.owl are included. This could imply that the geographic coordinates could change. This definition was originally in core:Geographic Location. I simply copied the definition from there. I think core:Geographic Location and core:Geographic Region are both the same and only one is needed. There is also geopolitical.owl:geographical_region which further causes confusion.
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
http://vivoweb.org/ontology/core#GeographicLocation
|
http://purl.org/ontology/bibo/Report |
|
http://www.w3.org/2003/06/sw-vocab-status/ns#term_status
|
stable
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
A document describing an account or statement describing in detail an event, situation, or the like, usually as the result of observation, inquiry, etc.
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
Report
|
|
http://purl.obolibrary.org/obo/IAO_0000112
|
Medical Subject Heading (MeSH) definition of Technical Report: Work consisting of a formal report giving details of the investigation and results of a medical or other scientific problem. When issued by a government agency or comparable official body, its contents may be classified, unclassified, or declassified with regard to security clearance. This publication type may also cover a scientific paper or article that records the current state or current position of scientific research and development. If so labeled by the editor or publisher, this publication type may be properly used for journal articles.
|
|
http://www.w3.org/2000/01/rdf-schema#isDefinedBy
|
http://purl.org/ontology/bibo/
|
|
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
|
http://www.w3.org/2002/07/owl#Class
|
|
http://www.w3.org/2000/01/rdf-schema#comment
|
A document describing an account or statement describing in detail an event, situation, or the like, usually as the result of observation, inquiry, etc..
|
|
http://www.w3.org/2000/01/rdf-schema#subClassOf
|
_:711 |
| _:581 |
| http://purl.org/ontology/bibo/Document
|
http://purl.org/ontology/bibo/Collection |
|
http://www.w3.org/2003/06/sw-vocab-status/ns#term_status
|
stable
|
|
http://www.w3.org/2000/01/rdf-schema#label
|
Collection
|
|
http://purl.obolibrary.org/obo/IAO_0000115
|
Collection of information resources that have a unified identity
|
|
http://www.w3.org/2000/01/rdf-schema#isDefinedBy
|
http://purl.org/ontology/bibo/
|
|
http://purl.obolibrary.org/obo/IAO_0000112
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Hill Ornithology Collection; Wiley Interscience Online Books Biochemisty Collection |
| Collection of information resources that have a unified identity. Archives, museums and libraries often acquire collections on specific subjects and from distinguished authors or researchers. Also includes collections of resources bundled into a license.
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http://www.w3.org/1999/02/22-rdf-syntax-ns#type
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http://www.w3.org/2002/07/owl#Class
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http://www.w3.org/2000/01/rdf-schema#comment
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A collection of Documents or Collections
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http://www.w3.org/2000/01/rdf-schema#subClassOf
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_:708 |
| http://purl.obolibrary.org/obo/IAO_0000030
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http://purl.obolibrary.org/obo/BFO_0000055 |
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http://purl.obolibrary.org/obo/BFO_0000179
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realizes
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http://www.w3.org/2000/01/rdf-schema#range
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http://purl.obolibrary.org/obo/BFO_0000017
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http://purl.obolibrary.org/obo/IAO_0000602
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(forall (x y t) (if (realizesAt x y t) (and (Process x) (or (Disposition y) (Role y)) (exists (z) (and (MaterialEntity z) (hasParticipantAt x z t) (bearerOfAt z y t)))))) // axiom label in BFO2 CLIF: [059-003]
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http://www.w3.org/2000/01/rdf-schema#label
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realizes
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http://purl.obolibrary.org/obo/IAO_0000600
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to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])
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http://www.w3.org/2000/01/rdf-schema#domain
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http://purl.obolibrary.org/obo/BFO_0000015
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http://www.w3.org/2000/01/rdf-schema#isDefinedBy
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http://purl.obolibrary.org/obo/bfo.owl
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http://www.w3.org/1999/02/22-rdf-syntax-ns#type
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http://www.w3.org/2002/07/owl#ObjectProperty
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http://purl.obolibrary.org/obo/BFO_0000180
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realizes
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http://vivoweb.org/ontology/core#Course |
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http://www.w3.org/2000/01/rdf-schema#label
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Course
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http://purl.obolibrary.org/obo/IAO_0000115
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A course as taught in one time period by one or more instructors, normally but not always for credit. Does not represent either each meeting of the course or the course offering such as Biology 101 taught every semester from 1980 to 2010
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http://purl.obolibrary.org/obo/IAO_0000112
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A course as taught in one time period (such as a semester; although note that a course could consist of only one meeting (teaching session)) by one or more instructors, normally but not always for credit. Does not represent either each meeting of the course or the course offering such as Biology 101 taught every semester from 1980 to 2010
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http://www.w3.org/1999/02/22-rdf-syntax-ns#type
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http://www.w3.org/2002/07/owl#Class
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http://www.w3.org/2000/01/rdf-schema#subClassOf
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http://purl.org/NET/c4dm/event.owl#Event |
| _:512
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http://purl.obolibrary.org/obo/BFO_0000017 |
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http://purl.obolibrary.org/obo/BFO_0000179
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realizable
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http://purl.obolibrary.org/obo/IAO_0000601
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All realizable dependent continuants have independent continuants that are not spatial regions as their bearers. (axiom label in BFO2 Reference: [060-002])
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http://purl.obolibrary.org/obo/IAO_0000602
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(forall (x) (if (RealizableEntity x) (and (SpecificallyDependentContinuant x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (inheresIn x y)))))) // axiom label in BFO2 CLIF: [058-002] |
| (forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002]
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http://www.w3.org/2000/01/rdf-schema#label
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Realizable Entity
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http://purl.obolibrary.org/obo/IAO_0000600
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To say that b is a realizable entity is to say that b is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region and is of a type instances of which are realized in processes of a correlated type. (axiom label in BFO2 Reference: [058-002])
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http://purl.obolibrary.org/obo/IAO_0000112
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the role of this boundary to delineate where Utah and Colorado meet |
| the disposition of this piece of metal to conduct electricity. |
| the function of your reproductive organs |
| the role of being a doctor |
| the disposition of your blood to coagulate
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http://www.w3.org/2000/01/rdf-schema#isDefinedBy
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http://purl.obolibrary.org/obo/bfo.owl
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http://www.w3.org/1999/02/22-rdf-syntax-ns#type
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http://www.w3.org/2002/07/owl#Class
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http://www.w3.org/2002/07/owl#disjointWith
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http://purl.obolibrary.org/obo/BFO_0000019
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http://www.w3.org/2000/01/rdf-schema#subClassOf
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http://purl.obolibrary.org/obo/BFO_0000020
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http://purl.obolibrary.org/obo/BFO_0000180
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RealizableEntity
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