https://mtp.linked.solutions/
http://xmlns.com/foaf/0.1/topic https://mtp.linked.solutions/wfm

http://purl.org/net/wf-motifs#DataAnalysis
http://www.w3.org/2000/01/rdf-schema#label Data analysis
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2002/07/owl#Class
http://www.w3.org/2000/01/rdf-schema#comment Data operation motif that refers to a broad category of tasks in diverse domains. An important number of workflows are designed with the purpose of analyzing different features of input data, ranging from simple comparisons between the datasets to complex protein analysis to see whether two molecules can be docked successfully or not.
http://www.w3.org/2000/01/rdf-schema#subClassOf http://purl.org/net/wf-motifs#DataOperationMotif

http://purl.org/dc/terms/creator
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2002/07/owl#AnnotationProperty

http://purl.org/net/wf-motifs#StatelessInvocaton
http://www.w3.org/2000/01/rdf-schema#label Stateless (synchronous) invocation
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2002/07/owl#Class
http://www.w3.org/2000/01/rdf-schema#comment Intra-workflow motif that requires a step in the workflow for performing a service call or tool invocation. All the steps of a workflow are by default stateless (synchronous) invocations unless they are explicitly declared to be stateful.
http://www.w3.org/2000/01/rdf-schema#subClassOf http://purl.org/net/wf-motifs#IntraWorkflowMotif

http://purl.org/dc/terms/description
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2002/07/owl#AnnotationProperty

http://purl.org/net/wf-motifs#DataRetrieval
http://www.w3.org/2000/01/rdf-schema#label Data retrieval
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2002/07/owl#Class
http://www.w3.org/2000/01/rdf-schema#comment Workflows exploit heterogeneous data sources, remote databases, repositories and other web resources mostly exposed via SOAP or REST services. Scientific data deposited in these repositories are retrieved through query and retrieval steps inside workflows. The data retrieval motif identifies those tasks within the workflow which are responsible for retrieving data from external sources into the workflow environment.
http://www.w3.org/2000/01/rdf-schema#subClassOf http://purl.org/net/wf-motifs#DataOperationMotif

http://purl.org/net/wf-motifs#Filter
http://www.w3.org/2000/01/rdf-schema#label Filter
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2002/07/owl#Class
http://www.w3.org/2000/01/rdf-schema#comment Data preparation motif that refers to a filtering step or set of steps. For example, A file filtered by a set of set of keywords, a table filtered by a threshold, etc.
http://www.w3.org/2000/01/rdf-schema#subClassOf http://purl.org/net/wf-motifs#DataPreparation

http://purl.org/net/wf-motifs#hasDataOperationMotif
http://www.w3.org/2000/01/rdf-schema#range http://purl.org/net/wf-motifs#DataOperationMotif
http://www.w3.org/2000/01/rdf-schema#label has data operation motif
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2002/07/owl#ObjectProperty
http://www.w3.org/2000/01/rdf-schema#comment Object property that binds a workflow step with its correspondent data operation motif.
http://www.w3.org/2000/01/rdf-schema#subPropertyOf http://purl.org/net/wf-motifs#hasMotif

http://purl.org/net/wf-motifs#HumanInteractionStep
http://www.w3.org/2000/01/rdf-schema#label Human interaction step
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2002/07/owl#Class
http://www.w3.org/2000/01/rdf-schema#comment Intra-workflow motif used to characterize the activities that require human inputs during their execution. For example, manual data curation of a table for a future step in the workflow, cleaning and filtering steps (such as selecting a specific dataset to continue the experiment), etc.
http://www.w3.org/2000/01/rdf-schema#subClassOf http://purl.org/net/wf-motifs#IntraWorkflowMotif

http://purl.org/net/wf-motifs#FormatTransformation
http://www.w3.org/2000/01/rdf-schema#label Format transformation
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2002/07/owl#Class
http://www.w3.org/2000/01/rdf-schema#comment Workflows that bring together multiple access or analysis activities usually contain steps for format transformations. These steps preserve the content of the inputs while converting its representation format. An example would be a converter from CSV to VOTable format in the astronomy domain, a converter from FASTA to Swiss-Prott sequence in biology, or an Arff formating component for Weka in the text analysis domain.
http://www.w3.org/2000/01/rdf-schema#subClassOf http://purl.org/net/wf-motifs#DataPreparation

http://purl.org/net/wf-motifs#StatefulInvocation
http://www.w3.org/2000/01/rdf-schema#label Stateful (asynchronous) invocation
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2002/07/owl#Class
http://www.w3.org/2000/01/rdf-schema#comment Certain activities such as analysis or visualizations could be performed through interaction with stateful (web) services that allow for creation of jobs over remote grid environments. These are typically performed via invocation of multiple operations at a service endpoint. An example would be a BLAST job submission where the service invoker is responsible to first create a job, then submit the data, check the status and retrieve the results once it has finished.
http://www.w3.org/2000/01/rdf-schema#subClassOf http://purl.org/net/wf-motifs#IntraWorkflowMotif

http://purl.org/net/wf-motifs#DataVisualization
http://www.w3.org/2000/01/rdf-schema#label Data visualization
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2002/07/owl#Class
http://www.w3.org/2000/01/rdf-schema#comment Being able to show the results is as important as producing them in some workflows. Scientists use visualizations to show the conclusions of their experiments and to take important decisions in the pipeline itself. Therefore certain steps in workflows are dedicated to generation of plots and graph outputs from input data. The data visualization motif also includes the generation of tables and files for browsing and reading the results of the workflow.
http://www.w3.org/2000/01/rdf-schema#subClassOf http://purl.org/net/wf-motifs#DataOperationMotif

http://purl.org/net/wf-motifs#Sort
http://www.w3.org/2000/01/rdf-schema#label Sort
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2002/07/owl#Class
http://www.w3.org/2000/01/rdf-schema#comment Data preparation motif that refers to the step or set of steps ordering the input by certain parameter. For example, a quicksort algorithm that takes an unordered vector and produces a sorted output.
http://www.w3.org/2000/01/rdf-schema#subClassOf http://purl.org/net/wf-motifs#DataPreparation

http://purl.org/net/wf-motifs#DataCleaning
http://www.w3.org/2000/01/rdf-schema#label Data cleaning
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2002/07/owl#Class
http://www.w3.org/2000/01/rdf-schema#comment Data operation motif that refers to the step or series of steps for cleaning and curating data in a workflow. Typically these steps are undertaken by sophisticated tooling/services, or by human interactions. A data cleaning step preserves and enriches the content of data (e.g., by a user’s annotation of a result with additional information, detecting and removing inconsistencies on the data, etc.).
http://www.w3.org/2000/01/rdf-schema#subClassOf http://purl.org/net/wf-motifs#DataOperationMotif

http://purl.org/net/wf-motifs#CompositeWorkflow
http://www.w3.org/2000/01/rdf-schema#label Composite workflow
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2002/07/owl#Class
http://www.w3.org/2000/01/rdf-schema#comment Inter-workflow motif referring to all those workflows that have one or more sub-workflows included in them (when these sub-workflows overlap they offer different views of the global workflow).
http://www.w3.org/2000/01/rdf-schema#subClassOf http://purl.org/net/wf-motifs#InterWorkflowMotif

http://purl.org/net/wf-motifs#WorkflowOverload
http://www.w3.org/2000/01/rdf-schema#label Workflow overload
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2002/07/owl#Class
http://www.w3.org/2000/01/rdf-schema#comment Inter-workflow motif used to characterize workflows that are used to operate over different input parameter types. An example is performing an analysis over a String input parameter, or performing it over the contents of a specified File. Overloading is a direct response to the heterogeneity of environments in which workflows are used.
http://www.w3.org/2000/01/rdf-schema#subClassOf http://purl.org/net/wf-motifs#InterWorkflowMotif

http://purl.org/net/wf-motifs#Combine
http://www.w3.org/2000/01/rdf-schema#label Combine
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2002/07/owl#Class
http://www.w3.org/2000/01/rdf-schema#comment Data preparation motif that refers to the step or group of steps in the workflow aggregating information from different sources. For example, the joining of two tables in a new one or the merging of three different files in a bigger one.
http://www.w3.org/2000/01/rdf-schema#subClassOf http://purl.org/net/wf-motifs#DataPreparation

http://purl.org/net/wf-motifs#InternalMacro
http://www.w3.org/2000/01/rdf-schema#label Internal macro
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2002/07/owl#Class
http://www.w3.org/2000/01/rdf-schema#comment Intra-workflow motif that refers to those groups of steps in the workflow that correspond to repetitive patterns of combining tasks. For example, if a workflow has several branches with the same sequence of repeated steps, the sequence becomes an internal macro.
http://www.w3.org/2000/01/rdf-schema#subClassOf http://purl.org/net/wf-motifs#IntraWorkflowMotif

http://purl.org/net/wf-motifs#AtomicWorkflow
http://www.w3.org/2000/01/rdf-schema#label Atomic workflow
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2002/07/owl#Class
http://www.w3.org/2000/01/rdf-schema#comment Inter-workflow motif used to characterize the workflows that perform an atomic unit of functionality, which effectively requires no sub-workflow usage. Typically these workflows are designed to be included in other workflows. Atomic workflows are the main mechanism of modularizing functionality within scientific workflows.
http://www.w3.org/2000/01/rdf-schema#subClassOf http://purl.org/net/wf-motifs#InterWorkflowMotif

http://purl.org/dc/terms/contributor
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2002/07/owl#AnnotationProperty

http://purl.org/net/wf-motifs#DataMovement
http://www.w3.org/2000/01/rdf-schema#label Data movement
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2002/07/owl#Class
http://www.w3.org/2000/01/rdf-schema#comment Certain analysis activities that are performed via external tools or services require the submission of data to a location accessible by the service/tool (i.e., a web or a local directory respectively). In such cases the workflow contains dedicated step(s) for the upload/transfer of data to these locations. The same applies to the outputs, in which case a data download/retrieval step is used to chain the data to the next steps of the workflow.
http://www.w3.org/2000/01/rdf-schema#subClassOf http://purl.org/net/wf-motifs#DataOperationMotif

http://purl.org/vocab/vann/preferredNamespacePrefix
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2002/07/owl#AnnotationProperty

http://purl.org/net/wf-motifs#hasWorkflowMotif
http://www.w3.org/2000/01/rdf-schema#range http://purl.org/net/wf-motifs#WorkflowMotif
http://www.w3.org/2000/01/rdf-schema#label has workflow motif
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2002/07/owl#ObjectProperty
http://www.w3.org/2000/01/rdf-schema#comment Object property that relates a workflow to its correspondent workflow motif.
http://www.w3.org/2000/01/rdf-schema#subPropertyOf http://purl.org/net/wf-motifs#hasMotif

http://purl.org/net/wf-motifs#InputAugmentation
http://www.w3.org/2000/01/rdf-schema#label Input augmentation
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2002/07/owl#Class
http://www.w3.org/2000/01/rdf-schema#comment Data preparation motif that refers to the step or set of steps dedicated to generate an aggregation of multiple parameters and scripts for tools and external services. For example, the generation of queries for input retrieval through an aggregation of multiple parameters, the generation of scripts to be executed in further steps, etc.
http://www.w3.org/2000/01/rdf-schema#subClassOf http://purl.org/net/wf-motifs#DataPreparation

http://purl.org/dc/terms/created
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2002/07/owl#AnnotationProperty

http://purl.org/net/wf-motifs#OutputExtraction
http://www.w3.org/2000/01/rdf-schema#label Output extraction
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2002/07/owl#Class
http://www.w3.org/2000/01/rdf-schema#comment Data preparation motif that refers to the step or set of steps in the workflow retrieving only the relevant portion from the the output of a previous step. For example, retrieving the tag value of an XML fragment.
http://www.w3.org/2000/01/rdf-schema#subClassOf http://purl.org/net/wf-motifs#DataPreparation

http://purl.org/net/wf-motifs#Split
http://www.w3.org/2000/01/rdf-schema#label Split
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2002/07/owl#Class
http://www.w3.org/2000/01/rdf-schema#comment Data preparation motif that refers to the step or steps in the workflow separating an input into different outputs. For example, splitting a dataset in three different subsets to be processed in parallel in a workflow.
http://www.w3.org/2000/01/rdf-schema#subClassOf http://purl.org/net/wf-motifs#DataPreparation

http://purl.org/net/wf-motifs#Group
http://www.w3.org/2000/01/rdf-schema#label Group
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2002/07/owl#Class
http://www.w3.org/2000/01/rdf-schema#comment Data preparation motif that refers to the step or set of steps that reorganize the input into different groups. For example, grouping a table by a certain category.
http://www.w3.org/2000/01/rdf-schema#subClassOf http://purl.org/net/wf-motifs#DataPreparation

http://purl.org/dc/terms/title
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2002/07/owl#AnnotationProperty

http://purl.org/vocab/vann/preferredNamespaceURI
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2002/07/owl#AnnotationProperty

http://purl.org/net/wf-motifs
http://purl.org/dc/terms/description Ontology for describing Workflow Motifs. Workflow Motifs outline the kinds of data-intensive activities that are observed in workflows (data-operation motifs) and the different manners in which activities are implemented within workflows (workflow-oriented motifs).
http://purl.org/dc/terms/created 2013-03-15
http://purl.org/dc/terms/contributor http://www.isi.edu/~gil/
http://www.cs.man.ac.uk/~carole/
http://www.oeg-upm.net/index.php/teachers/11-ocorcho
http://www.w3.org/2000/01/rdf-schema#label Workflow Motif Ontology
http://purl.org/dc/terms/license http://creativecommons.org/licenses/by-nc-sa/2.0/
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2002/07/owl#Ontology
http://www.w3.org/2002/07/owl#versionInfo 1.02
http://www.w3.org/2000/01/rdf-schema#comment This ontology is based on the paper: Common Motifs in Scientific Workflows:An Empirical Analysis, by Daniel Garijo, Pinar Alper, Khalid Belhajjame, Oscar Corcho, Yolanda Gil and Carole Goble
Workflow Motif Ontology, created by Daniel Garijo, Pinar Alper and Khalid Belhajjame
http://purl.org/dc/terms/title The Workflow Motif Ontology
http://purl.org/vocab/vann/preferredNamespaceUri http://purl.org/net/wf-motifs#
http://purl.org/vocab/vann/preferredNamespacePrefix wfm
http://purl.org/dc/terms/creator http://semanticweb.org/wiki/Pinar_Alper
http://semanticweb.org/wiki/Khalid_Belhajjame
http://delicias.dia.fi.upm.es/members/DGarijo/#me

http://purl.org/net/wf-motifs#ComputationalStep
http://www.w3.org/2000/01/rdf-schema#label Computational step
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2002/07/owl#Class
http://www.w3.org/2000/01/rdf-schema#comment Intra-workflow motif used to refer to activities performed by a computer. This motif applies to most of the steps of the workflow, except for those being human interaction steps.
http://www.w3.org/2000/01/rdf-schema#subClassOf http://purl.org/net/wf-motifs#IntraWorkflowMotif

http://purl.org/net/wf-motifs#DataOperationMotif
http://www.w3.org/2000/01/rdf-schema#label Data operation motif
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2002/07/owl#Class
http://www.w3.org/2000/01/rdf-schema#comment A data operation motif describes the data manipulation and/or transformation carried out by a step in the workflow, a collection of steps in the workflow or a sub-workflow.
http://www.w3.org/2000/01/rdf-schema#subClassOf http://purl.org/net/wf-motifs#Motif

https://mtp.linked.solutions/wfm
http://purl.org/dc/terms/source https://github.com/linked-solutions/prefix.cc-harvest/master
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2002/07/owl#Ontology
http://purl.org/vocab/vann/preferredNamespaceUri http://purl.org/net/wf-motifs#
http://purl.org/vocab/vann/preferredNamespacePrefix wfm
http://rdfs.org/ns/void#triples 145

http://purl.org/net/wf-motifs#IntraWorkflowMotif
http://www.w3.org/2000/01/rdf-schema#label Intra-workflow motif
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2002/07/owl#Class
http://www.w3.org/2000/01/rdf-schema#comment Workflow motif that describes a step or a series of steps within a single workflow.
http://www.w3.org/2000/01/rdf-schema#subClassOf http://purl.org/net/wf-motifs#WorkflowMotif

http://purl.org/net/wf-motifs#WorkflowMotif
http://www.w3.org/2000/01/rdf-schema#label Workflow motif
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2002/07/owl#Class
http://www.w3.org/2000/01/rdf-schema#comment Motif that describes how a data operation motif is realized (i.e., implemented) within a workflow. For example, a visualization step (data operation motif) can be realized in different ways: via a stateful multi-step invocation, through a single stateless invocation (depending on the environmental constraints and nature of the services), or via a sub-workflow.
http://www.w3.org/2000/01/rdf-schema#subClassOf http://purl.org/net/wf-motifs#Motif

http://purl.org/net/wf-motifs#InterWorkflowMotif
http://www.w3.org/2000/01/rdf-schema#label Inter-workflow motif
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2002/07/owl#Class
http://www.w3.org/2000/01/rdf-schema#comment Workflow motif that relates workflows with each other by determining whether different workflows are a composition of each other (composite workflow) or not (atomic workflow), or they have a very similar composition but work for different inputs (workflow overloading).
http://www.w3.org/2000/01/rdf-schema#subClassOf http://purl.org/net/wf-motifs#WorkflowMotif

http://purl.org/net/wf-motifs#Motif
http://www.w3.org/2000/01/rdf-schema#label Motif
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2002/07/owl#Class
http://www.w3.org/2000/01/rdf-schema#comment A motif is a domain independent conceptual abstraction of one or more steps of a given workflow.

http://purl.org/net/wf-motifs#DataPreparation
http://www.w3.org/2000/01/rdf-schema#label Data preparation
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2002/07/owl#Class
http://www.w3.org/2000/01/rdf-schema#comment Data, as it is originally retrieved, may need several transformations before being able to be used in a workflow step. These steps, typically known as ”Shims” [Duncan Hull et al. Treating shimantic web syndrome with ontologies. In AKT Workshop on Semantic Web Services, 2004.], can be annotated using the Data Preparation motif.
http://www.w3.org/2000/01/rdf-schema#subClassOf http://purl.org/net/wf-motifs#DataOperationMotif

http://purl.org/net/wf-motifs#hasMotif
http://www.w3.org/2000/01/rdf-schema#range http://purl.org/net/wf-motifs#Motif
http://www.w3.org/2000/01/rdf-schema#label has motif
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2002/07/owl#ObjectProperty
http://www.w3.org/2000/01/rdf-schema#comment Object property that annotates a step in the workflow, a group of steps, a subworkflow, or a workflow with a motif.